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BioHarbor

Run real bioinformatics from your AI agent. Reliable, reproducible, on your own GPUs.

Python Local macOSWindowsLinux

★ 0 stars Last pushed 2026-10-10 License: Apache-2.0

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Review any command before running it. Package names and URLs come from the server's own registry entry.

uvx bioharbor

Or add to your MCP client config:

{
  "mcpServers": {
    "bioharbor": {
      "command": "uvx",
      "args": [
        "bioharbor"
      ]
    }
  }
}

This server takes extra arguments — see its repository.

Access biomedical research data from PubMed, ClinicalTrials.gov and MyVariant.info.

Access and analyze exported Apple Health data.

Typed FHIR tools: build, read, validate and code FHIR resources from a patient bundle, with terminology lookup and machine-readable…

MCP server providing seamless access to FHIR APIs for AI tools and healthcare applications

Query medical information, drug databases, drug interactions and clinical guidelines.

Connect to FHIR servers, for example to query patient history in natural language.

Data from the Official MCP Registry